crispy.pruning.pruning

Utilities for skeleton processing, branch property initialization, and pruning in 2D and 3D structures.

Functions

bodyPoints	Identify body points in a skeletonized structure.
branchedPoints	Identify branch points in a skeletonized structure.
classify_structure	Classify the components of a skeleton into labeled branches, intersections, and endpoints.
endPoints	Identify endpoints in a skeletonized structure.
init_branch_properties	Initialize branch properties for 2D or 3D skeletons.
init_lengths_3D	Compute lengths and intensities for branches in 3D skeletons.
main_length_3D	Compute the main lengths of 3D skeletons and generate longest path arrays.
pre_graph_3D	Convert 3D skeletons into graph representations with weighted edges.
remove_bad_ppv_branches	Remove unphysical branches from a labeled 3D skeleton in PPV space.
segment_len	Calculate the length of a skeleton segment.
walk_through_segment_3D	Traverse a 3D skeleton segment to obtain an ordered list of pixel coordinates.